Showing : Combat SVA • reset
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SVA behaving weirdly, system is computationally singular , problem with method leek only
SVA combat sva leek
updated 3.0 years ago by • 0 • written 7.1 years ago by ▴ 10
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941
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ComBat covariate bias when building centroid based predictors
combat combat sva pamr limma design matrix sva
5.7 years ago jmsendoya • 0
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Help with multiple batch effects
combat sva batch effect
5.9 years ago Fp • 0
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635
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Number of SVA increased after ComBat
combat sva
6.1 years ago jonellevillar • 0
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1.2k
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Combat prior plots good enough?
combat combat sva
6.6 years ago Miss Agnieszka Aleksandra Golicz ▴ 40
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removing batch effects using sva combat and linear regression
combat sva microarry Jeff leek
6.9 years ago DataFanatic ▴ 10
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892
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SVA: Reference manual improvment
combat sva sva
7.0 years ago alice.anlind • 0
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1.2k
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What is the input for Combat in R?
combat sva input files
7.2 years ago arisarkar88 ▴ 40
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1.2k
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RPKM counts with SVA package & Combat with SVA?
batch effect combat sva sva
7.2 years ago Ahdee ▴ 50
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2
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958
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Problem with Combat batch adjustment
combat sva
7.5 years ago vinnu260 ▴ 10
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1.6k
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is it possible to before and after batch effect removal from the data and see that batch effect removal actually worked
combat sva batch effect comba
updated 7.5 years ago by ▴ 110 • written 7.5 years ago by ▴ 10
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is it necessary to check batch effect in this case? and how to?
svaseq combat sva RANseq batcheffect removebatcheffect
updated 7.6 years ago by ▴ 50 • written 7.6 years ago by ▴ 10
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SVA) Error while using 'sva' package - combat
combat sva
7.7 years ago kkwon • 0
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Inspection of batch effect correction success with ComBat in R, regarding a merged dataset comprised of 4 different batches
affymetrix microarrays sva combat sva batch effect plotMDS
updated 7.7 years ago by ▴ 650 • written 7.7 years ago by ▴ 830
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1.3k
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Batch effect problem using SVA showing problems
SVA combat sva batch effect
updated 7.8 years ago by ▴ 650 • written 7.8 years ago by ▴ 10
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4
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1.9k
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ComBat: Adjustment for 3experimental variables
ENmix combat.mc illumina450k combat sva
7.9 years ago DSP • 0
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SVA: Using ComBat for synthetic genetic array data
combat sva sga combat batch effect
8.1 years ago John Townsend ▴ 20
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SVA: Including variable of interest in ComBat model matrix
combat sva SVA sva ComBat batch effect
updated 8.1 years ago by ▴ 850 • written 8.1 years ago by ▴ 20
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2.5k
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cross platform normalization in R
R Combat SVA
updated 8.3 years ago by ★ 13k • written 8.3 years ago by • 0
19 results • Page 1 of 1
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Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 65k
If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …
Comment: Help with ENmix readidat by James W. MacDonald 65k
Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …
Comment: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 65k
In that case, probably easiest to subset to the groups being compared.
Comment: Help with ENmix readidat by minardsmitha ▴ 10
Did you figure this out? I have the same issue.
Comment: LRT, more than two conditions and pairwise comparisons by boczniak767 ▴ 720
Thank you for response, apparently I still don't know much about statistics. In fact I want to campare time-profiles [and the LRT has been …
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